PlasPredict - Online Plasmid Host Range Prediction

1. Plasmid Sequence

Paste Sequence Upload File

FASTA Sequence: Enter your plasmid sequence in FASTA format

Select FASTA File: Supported formats: .fna, .fasta, .fa, .txt

2. Plasmid Characteristics

Incompatibility Type(s):

Antibiotic Class(es):

Aminocoumarin Aminoglycoside Free fatty acids Bicyclomycin-like Carbapenem Cephamycin Diaminopyrimidine Disinfectants/antiseptics Elfamycin Fluoroquinolone Glycopeptide Glycylcycline Isoniazid-like Lincosamide Macrolide Monobactam Mupirocin-like Nitrofuran Orthosomycin Oxazolidinone Penam Penem Peptide Phenicol Phosphonic acid Pleuromutilin Polyamine Pyrazine Rifamycin Salicylic acid Streptogramin Streptogramin A Streptogramin B Sulfonamide Tetracycline Thioamide

Antibiotic Resistance Mechanism(s):

Efflux Inactivation Target Replacement Target Protection Target Modification Reduced Uptake

Isolation Source:

Aquatic animal Clinical Domestic animal Fungus Human Insect Plant Soil Wastewater Water Wild animal

Running prediction...

Results

Sequence Information

Sequence ID:

Sequence Length: bp

Detected Conjugative Elements

Prediction

Score:

Prediction Scores

Host Range Categories

≤ Species: Plasmid restricted to specific species
Genus/Family: Plasmid spans genus or family level
Order/Class: Plasmid spans order or class level
≥ Phylum: Plasmid can proliferate across phyla

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Chalmers University of Technology, Göteborg, Sweden • Erasmus University Medical Centre, Rotterdam, The Netherlands